Bryan,
This seems like a simple setup...
There was an early run of bad RAMSA ADAT cards that would not function properly at both 44.1 and 48K fs.
Also try using the ADAT lightpipe connection as the source of Wordclock sync by selecting one of the SLOTS that has a [LOCK] status in the mixers D-I/O Input Set Window. Position the cursor over the soft button and press [ENTER].
This condition seems like its wordclcock related and could be hardware, cables or both.
Good luck,